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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
8
snATAC-seq
1
ATAC-seq
Assay category
10
Transcription
9
DNA accessibility
Date released
8
August, 2021
8
January, 2021
2
May, 2021
1
January, 2018
Available data
96
bam
fastq
83
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
19
Homo sapiens
Biosample type
9
cell line
8
primary cell
2
in vitro differentiated cells
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
11
AMP
8
T1D
Genome assembly (visualization)
11
hg19
10
GRCh38
Lab
11
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assembly!
hg18
files.file_type!
fastq
BIOSAMPLE
ASSAY
19 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
cell line
H1-hESC
8
GM12878
1
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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