Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
124
total RNA-seq
22
ATAC-seq
5
pCHi-C
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
140
DNA binding
126
Transcription
23
DNA accessibility
4
3D chromatin structure
Target of assay
78
histone
78
histone modification
39
broad histone mark
38
narrow histone mark
37
transcription factor
25
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
August, 2021
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
1
August, 2018
Available data
254
bam
225
bigWig
137
fastq
124
tsv
105
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
298
Homo sapiens
Biosample type
2326
tissue
605
cell line
520
primary cell
298
in vitro differentiated cells
7
stem cell
Organ
93
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
298
AMP
Genome assembly (visualization)
256
hg19
235
GRCh38
hg18
Lab
298
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assembly!
hg18
month_released!
August, 2021
BIOSAMPLE
ASSAY
298 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
+ See 27 more…
See all biosamples
Download