Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
20
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
narrow histone mark
4
control
Date released
June, 2019
19
August, 2017
10
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
20
bigWig
12
bam
12
bed narrowPeak
10
tagAlign
9
tsv
8
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
4
bigBed narrowPeak
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
44
Homo sapiens
Biosample type
41
tissue
3
primary cell
Organ
869
pancreas
729
liver
637
connective tissue
478
adipose tissue
457
epithelium
320
heart
259
kidney
203
vasculature
200
blood vessel
159
bone element
139
brain
133
artery
75
limb
68
blood
68
bodily fluid
52
eye
44
musculature of body
35
nerve
28
embryo
23
spleen
20
lung
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
25
hg19
11
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
hg18
target.investigated_as!
narrow histone mark
month_released!
June, 2019
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
1
muscle of leg
5
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
Download