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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
174
single cell RNA-seq
137
ATAC-seq
135
total RNA-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
17
DNase-seq
15
WGBS
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
309
Transcription
181
DNA accessibility
17
DNA methylation
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
227
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
16
June, 2019
15
April, 2019
14
May, 2023
July, 2019
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
249
bam
207
bed narrowPeak
158
tsv
156
txt
133
tagAlign
116
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
csv
Organism
1001
Homo sapiens
Biosample type
1004
tissue
459
primary cell
131
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
192
heart
121
brain
92
liver
91
pancreas
88
bone element
65
connective tissue
64
adipose tissue
61
blood vessel
61
vasculature
46
artery
26
eye
21
limb
20
lung
16
musculature of body
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
909
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1798
GRCh38
hg19
Lab
696
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
assay_slims!
3D chromatin structure
month_released!
July, 2019
BIOSAMPLE
ASSAY
1004 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
DNase-seq
WGBS
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
4
liver
62
1
20
1
3
bone element
84
left cardiac atrium
40
18
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