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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
47
WGBS
28
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
28
DNA binding
Target of assay
25
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
12
August, 2017
6
October, 2019
3
December, 2017
2
June, 2019
2
November, 2019
1
August, 2021
1
May, 2019
1
May, 2021
Available data
28
bam
15
fastq
2
tagAlign
Organism
28
Homo sapiens
Biosample type
22
primary cell
4
in vitro differentiated cells
2
cell line
Organ
123
liver
95
brain
77
connective tissue
60
heart
55
pancreas
54
adipose tissue
28
epithelium
23
blood vessel
23
vasculature
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
spleen
7
embryo
6
blood
6
bodily fluid
5
vein
4
gonad
4
ovary
3
eye
1
lymph node
Project
28
AMP
Genome assembly (visualization)
hg19
97
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
epithelial cell of proximal tubule
2
hepatocyte
1
+ See 2 more…
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
cell line
EndoC_BH1
2
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