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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
54
ChIP-seq
51
WGBS
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
DNA accessibility
72
Transcription
54
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
50
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
47
May, 2022
43
February, 2023
29
August, 2017
16
September, 2020
11
October, 2018
10
November, 2020
7
October, 2019
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
May, 2021
2
November, 2019
1
February, 2020
1
May, 2019
Available data
97
fastq
50
bam
41
zippedFastqFolder
9
tsv
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
4
bigWig
4
tagAlign
1
bedpe bed3+
Organism
190
Homo sapiens
Biosample type
112
primary cell
62
tissue
18
cell line
Organ
192
pancreas
167
heart
165
liver
139
epithelium
135
kidney
109
brain
93
connective tissue
88
bone element
65
adipose tissue
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
100
HPAP
85
AMP
7
T1D
Genome assembly (visualization)
hg19
525
GRCh38
Lab
100
Klaus Kaestner, Upenn
69
AMP-T2D consortium
11
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
month_released!
May, 2021
BIOSAMPLE
ASSAY
192 results
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total RNA-seq
ChIP-seq
WGBS
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
42
6
31
pancreatic beta cell
11
6
16
tissue
islet of Langerhans
18
19
4
1
body of pancreas
1
9
2
pancreas
3
2
1
endocrine pancreas
2
cell line
EndoC_BH1
2
6
2
1
Panc1
7
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