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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
12
DNA binding
4
3D chromatin structure
DNA methylation
3
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
9
August, 2017
4
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
3
bam
3
tsv
2
tagAlign
Organism
20
Homo sapiens
Biosample type
18
tissue
2
primary cell
Organ
160
liver
159
heart
143
pancreas
135
kidney
109
brain
93
epithelium
89
bone element
88
connective tissue
59
adipose tissue
33
blood vessel
33
vasculature
26
eye
25
limb
20
musculature of body
13
artery
12
nerve
10
lung
9
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
hg19
19
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
DNA methylation
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
Hi-C
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
muscle of leg
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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