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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
total RNA-seq
4
Hi-C
2
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
12
DNA binding
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
5
July, 2019
4
February, 2023
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
4
txt
3
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
27
Homo sapiens
Biosample type
25
tissue
2
primary cell
Organ
194
pancreas
167
heart
165
liver
140
epithelium
135
kidney
109
brain
94
connective tissue
89
bone element
65
adipose tissue
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
hg19
20
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
2
1
gastrocnemius medialis
1
4
muscle of leg
1
1
acetabular part of hip bone
1
ilium
1
+ See 4 more…
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
See all biosamples
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