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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
8
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
6
control
6
histone
6
histone modification
broad histone mark
2
narrow histone mark
Date released
7
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
3
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
19
Homo sapiens
Biosample type
17
tissue
2
primary cell
Organ
189
pancreas
153
liver
147
heart
138
epithelium
135
kidney
89
bone element
66
connective tissue
64
brain
45
adipose tissue
33
blood vessel
33
vasculature
26
eye
26
limb
19
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
hg19
12
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
5
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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