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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
55
ChIP-seq
51
WGBS
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
DNA accessibility
73
Transcription
55
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
47
May, 2022
43
February, 2023
29
August, 2017
16
September, 2020
11
October, 2018
10
November, 2020
7
October, 2019
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
May, 2021
2
November, 2019
1
February, 2020
1
May, 2019
Available data
97
fastq
51
bam
41
zippedFastqFolder
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
4
bigWig
1
bedpe bed3+
Organism
192
Homo sapiens
Biosample type
112
primary cell
63
tissue
18
cell line
1
in vitro differentiated cells
Organ
194
pancreas
165
liver
140
epithelium
135
kidney
127
heart
109
brain
94
connective tissue
89
bone element
65
adipose tissue
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
HPAP
87
AMP
7
T1D
Genome assembly (visualization)
hg19
568
GRCh38
Lab
100
Klaus Kaestner, Upenn
70
AMP-T2D consortium
12
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
194 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
42
6
31
pancreatic beta cell
11
6
16
tissue
islet of Langerhans
18
19
4
1
body of pancreas
1
9
2
pancreas
1
3
2
1
endocrine pancreas
2
cell line
EndoC_BH1
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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