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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
55
ChIP-seq
45
WGBS
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
DNA accessibility
73
Transcription
55
DNA binding
45
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
47
May, 2022
43
February, 2023
29
August, 2017
16
September, 2020
11
October, 2018
10
November, 2020
7
October, 2019
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
May, 2021
2
November, 2019
1
February, 2020
1
May, 2019
Available data
91
fastq
51
bam
41
zippedFastqFolder
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
4
bigWig
3
tsv
1
bedpe bed3+
Organism
186
Homo sapiens
Biosample type
106
primary cell
63
tissue
18
cell line
1
in vitro differentiated cells
Organ
188
pancreas
165
heart
164
liver
134
epithelium
127
kidney
109
brain
94
connective tissue
65
adipose tissue
33
blood vessel
33
vasculature
26
eye
26
limb
23
musculature of body
12
nerve
11
artery
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
bone element
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
HPAP
87
AMP
7
T1D
Genome assembly (visualization)
hg19
542
GRCh38
Lab
94
Klaus Kaestner, Upenn
70
AMP-T2D consortium
12
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
month_released!
February, 2021
BIOSAMPLE
ASSAY
188 results
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total RNA-seq
ChIP-seq
WGBS
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
42
6
25
pancreatic beta cell
11
6
16
tissue
islet of Langerhans
18
19
4
1
body of pancreas
1
9
2
pancreas
1
3
2
1
endocrine pancreas
2
cell line
EndoC_BH1
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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