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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
77
total RNA-seq
55
ChIP-seq
51
WGBS
10
MeRIP-seq
2
Capture-C
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
DNA accessibility
77
Transcription
55
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
90
February, 2021
47
February, 2023
47
May, 2022
29
August, 2017
16
September, 2020
11
October, 2018
10
November, 2020
7
October, 2019
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
3
May, 2021
2
November, 2019
1
February, 2020
1
May, 2019
Available data
97
fastq
94
txt
51
bam
41
zippedFastqFolder
9
tsv
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
4
bigWig
1
bedpe bed3+
Organism
281
Homo sapiens
Biosample type
151
tissue
113
primary cell
18
cell line
1
in vitro differentiated cells
Organ
194
pancreas
167
heart
165
liver
140
epithelium
135
kidney
109
brain
94
connective tissue
89
bone element
65
adipose tissue
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
100
HPAP
8
T1D
Genome assembly (visualization)
hg19
626
GRCh38
Lab
158
AMP-T2D consortium
100
Klaus Kaestner, Upenn
13
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
94
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
283 results
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RNA microarray
total RNA-seq
ChIP-seq
WGBS
MeRIP-seq
Capture-C
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
tissue
bone element
84
islet of Langerhans
18
19
4
1
body of pancreas
1
9
2
pancreas
1
3
2
1
endocrine pancreas
2
+ See 4 more…
primary cell
pancreatic alpha cell
42
6
31
pancreatic beta cell
11
6
16
megakaryocyte
1
cell line
EndoC_BH1
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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