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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
51
ChIP-seq
51
WGBS
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
DNA accessibility
73
Transcription
51
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
narrow histone mark
Date released
47
May, 2022
43
February, 2023
25
August, 2017
16
September, 2020
11
October, 2018
10
November, 2020
7
October, 2019
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
May, 2021
2
November, 2019
1
February, 2020
1
May, 2019
Available data
97
fastq
51
bam
41
zippedFastqFolder
9
tsv
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
4
bigWig
3
tagAlign
1
bedpe bed3+
Organism
188
Homo sapiens
Biosample type
112
primary cell
59
tissue
18
cell line
1
in vitro differentiated cells
Organ
190
pancreas
157
liver
152
heart
139
epithelium
135
kidney
89
bone element
84
brain
79
connective tissue
55
adipose tissue
34
blood vessel
34
vasculature
25
limb
24
eye
21
musculature of body
13
artery
12
nerve
11
spleen
10
lung
7
embryo
6
blood
6
bodily fluid
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
HPAP
83
AMP
7
T1D
Genome assembly (visualization)
hg19
501
GRCh38
Lab
100
Klaus Kaestner, Upenn
66
AMP-T2D consortium
12
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
ChIP-seq
WGBS
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
42
6
31
pancreatic beta cell
11
6
16
tissue
islet of Langerhans
18
15
4
1
body of pancreas
1
9
2
pancreas
1
3
2
1
endocrine pancreas
2
cell line
EndoC_BH1
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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