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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ATAC-seq
9
pCHi-C
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
16
DNA accessibility
13
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
17
August, 2021
16
May, 2021
8
March, 2020
6
February, 2023
6
November, 2020
4
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
18
tsv
3
fastq
2
bigWig
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
56
Homo sapiens
Biosample type
644
tissue
428
primary cell
55
cell line
18
in vitro differentiated cells
7
stem cell
Organ
25
epithelium
25
pancreas
15
liver
4
kidney
1
connective tissue
1
mammary gland
Project
53
AMP
5
T1D
4
community
Genome assembly (visualization)
hg19
118
GRCh38
1
hg18
Lab
32
AMP-T2D consortium
15
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
Audit category:
28
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ATAC-seq
pCHi-C
total RNA-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
GRO-seq
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
16
6
3
2
2
1
HepG2
1
9
2
1
1
1
EndoC-BH1
1
1
HEK293T
2
MCF-7
1
MIN6
1
RCC 7860 VHL
1
RCC 7860 vector
1
Synthesized DNA
1
fibroblast cell line
1
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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