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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
4
WGBS
4
pCHi-C
1
RNA microarray
Assay category
DNA binding
6
Transcription
4
DNA methylation
Date released
4
August, 2017
4
February, 2023
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2021
Available data
4
fastq
4
tsv
3
bam
bigWig
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
14
Homo sapiens
Biosample type
8
tissue
5
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
217
pancreas
205
kidney
169
epithelium
136
heart
89
bone element
46
blood vessel
46
vasculature
42
liver
39
artery
24
eye
20
lung
15
brain
15
connective tissue
10
musculature of body
9
adipose tissue
8
blood
8
bodily fluid
7
limb
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
14
AMP
1
T1D
Genome assembly (visualization)
hg19
3
GRCh38
Lab
14
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA binding
files.file_type!
bigWig
BIOSAMPLE
ASSAY
15 results
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Clear Filters
total RNA-seq
WGBS
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
3
adipose tissue
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
white fat cell
1
primary cell
adult endothelial progenitor cell
1
stem cell
mesenchymal stem cell
1
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