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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
total RNA-seq
231
ATAC-seq
211
single cell RNA-seq
87
RNA microarray
62
snATAC-seq
53
pCHi-C
34
WGBS
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
211
Transcription
Date released
106
August, 2021
47
September, 2023
21
September, 2020
18
February, 2021
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
105
tsv
zippedFastqFolder
36
fastq
13
txt
8
csv
Organism
211
Homo sapiens
Biosample type
174
tissue
35
primary cell
2
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
122
AMP
47
KPMP
33
HPAP
9
LungMap
Genome assembly (visualization)
100
GRCh38
hg19
Lab
111
AMP-T2D consortium
47
KPMP
33
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA binding
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
33
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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