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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
10
DNase-seq
3
ATAC-seq
2
pCHi-C
Assay category
DNA binding
13
DNA accessibility
12
Transcription
Date released
12
February, 2020
10
June, 2019
2
March, 2020
1
July, 2019
1
October, 2017
1
October, 2019
Available data
14
tsv
12
bam
12
bigWig
10
bed bed3+
10
bed broadPeak
10
bed narrowPeak
10
bigBed broadPeak
10
bigBed narrowPeak
1
fastq
Organism
27
Homo sapiens
Biosample type
27
tissue
Organ
233
pancreas
212
kidney
185
epithelium
145
heart
89
bone element
48
blood vessel
vasculature
43
liver
39
artery
27
brain
24
eye
20
lung
18
connective tissue
11
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
8
limb
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
44
GRCh38
hg19
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA binding
organ_slims!
vasculature
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
Ammon's horn
1
1
1
caudate nucleus
1
1
cerebellum (Hemisphere)
1
1
putamen
1
1
amygdala
1
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