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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
total RNA-seq
12
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
80
Transcription
12
DNA accessibility
Date released
134
May, 2022
98
February, 2023
81
May, 2021
59
September, 2020
58
May, 2020
49
November, 2017
48
February, 2021
31
August, 2017
30
August, 2021
18
October, 2019
15
June, 2019
10
March, 2020
8
February, 2018
8
January, 2021
8
November, 2018
7
August, 2020
6
November, 2020
5
December, 2017
5
January, 2018
5
March, 2023
3
January, 2019
2
December, 2019
2
November, 2019
1
August, 2018
1
December, 2018
1
May, 2019
1
October, 2022
1
September, 2018
Available data
76
fastq
12
tsv
Organism
97
Homo sapiens
Biosample type
88
primary cell
tissue
6
cell line
4
in vitro differentiated cells
Organ
38
epithelium
38
pancreas
4
connective tissue
Project
76
HPAP
17
AMP
5
T1D
Genome assembly (visualization)
hg19
Lab
76
Klaus Kaestner, Upenn
17
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA sequencing
biosample_type!
tissue
BIOSAMPLE
ASSAY
98 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
cell line
EndoC_BH1
3
2
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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