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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
41
WGBS
39
ATAC-seq
34
single cell RNA-seq
21
snATAC-seq
Assay category
85
Transcription
60
DNA accessibility
41
DNA methylation
Date released
258
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
134
zippedFastqFolder
25
tsv
6
bam
6
fastq
6
txt
Organism
186
Homo sapiens
Biosample type
134
primary cell
52
tissue
Organ
87
pancreas
80
epithelium
21
liver
12
brain
3
blood vessel
3
heart
3
limb
3
musculature of body
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
134
HPAP
52
AMP
Genome assembly (visualization)
hg19
Lab
134
Klaus Kaestner, Upenn
26
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
186 results
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total RNA-seq
WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
liver
20
islet of Langerhans
6
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
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