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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ATAC-seq
83
snATAC-seq
3
DNase-seq
Assay category
515
Transcription
470
DNA binding
356
DNA accessibility
78
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
70
August, 2021
60
February, 2023
60
May, 2022
55
May, 2020
27
February, 2021
16
January, 2021
16
May, 2021
15
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
60
zippedFastqFolder
39
fastq
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
bigBed narrowPeak
12
tsv
Organism
355
Homo sapiens
Biosample type
174
primary cell
166
tissue
16
cell line
Organ
92
pancreas
83
kidney
67
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
10
lung
8
blood
8
bodily fluid
3
brain
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
220
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
210
GRCh38
Lab
137
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
22
inconsistent ontology term
assembly!
hg19
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
356 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 9 more…
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
26
7
lung
10
pancreas
4
+ See 3 more…
cell line
EndoC_BH1
16
See all biosamples
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