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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ATAC-seq
97
ChIP-seq
17
DNase-seq
Assay category
116
DNA accessibility
97
DNA binding
Target of assay
88
histone
88
histone modification
57
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
65
August, 2021
54
November, 2017
40
May, 2024
35
February, 2023
17
June, 2019
2
November, 2018
Available data
360
bam
266
fastq
213
bed narrowPeak
189
tsv
158
tagAlign
157
txt
137
bigWig
73
bigBed narrowPeak
73
zippedFastqFolder
64
xls
18
bed broadPeak
17
bed bed3+
17
bed bedMethyl
17
bigBed bedMethyl
17
bigBed broadPeak
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
213
Homo sapiens
Biosample type
207
tissue
4
cell line
1
in vitro differentiated cells
1
primary cell
Organ
78
heart
71
kidney
62
brain
36
blood vessel
36
vasculature
35
artery
epithelium
4
liver
2
pancreas
1
connective tissue
Project
213
AMP
Genome assembly (visualization)
1494
GRCh38
hg19
Lab
109
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
assembly!
hg19
assay_title!
STARR-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
213 results
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ATAC-seq
ChIP-seq
DNase-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
+ See 17 more…
cell line
HepG2
4
in vitro differentiated cells
neural progenitor cell
1
primary cell
cardiac fibroblast
1
See all biosamples
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