Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
269
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
63
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
269
DNA accessibility
Date released
64
August, 2021
58
February, 2023
55
May, 2020
39
May, 2022
16
May, 2021
13
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
July, 2019
1
October, 2017
Available data
99
bed narrowPeak
64
xls
39
zippedFastqFolder
12
fastq
12
tsv
11
bigWig
2
bam
1
bed broadPeak
Organism
269
Homo sapiens
Biosample type
137
tissue
116
primary cell
16
cell line
Organ
81
pancreas
75
kidney
65
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
2
brain
1
eye
1
pituitary gland
1
skin of body
Project
209
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
hg19
228
GRCh38
Lab
132
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
assembly!
hg19
month_released!
July, 2019
BIOSAMPLE
ASSAY
269 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
26
cerebellum (Hemisphere)
1
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
+ See 5 more…
cell line
EndoC_BH1
16
See all biosamples
Download