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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA accessibility
Date released
23
June, 2019
3
February, 2021
2
October, 2019
1
August, 2017
Available data
23
bam
23
bed bed3+
23
bed broadPeak
23
bed narrowPeak
23
bigBed broadPeak
23
bigBed narrowPeak
23
bigWig
3
tsv
Organism
29
Homo sapiens
Biosample type
20
tissue
9
primary cell
Organ
12
kidney
10
brain
8
epithelium
3
heart
2
pancreas
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
29
AMP
Genome assembly (visualization)
207
GRCh38
hg19
Lab
29
AMP-T2D consortium
assembly!
hg19
BIOSAMPLE
ASSAY
29 results
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DNase-seq
snDrop-seq
tissue
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 13 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
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