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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
431
ChIP-seq
267
ATAC-seq
263
single cell RNA-seq
236
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
51
pCHi-C
16
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA accessibility
Date released
13
June, 2019
2
October, 2019
1
August, 2017
Available data
13
bam
13
bed bed3+
13
bed broadPeak
13
bed narrowPeak
13
bigBed broadPeak
13
bigBed narrowPeak
13
bigWig
Organism
16
Homo sapiens
Biosample type
9
primary cell
7
tissue
Organ
brain
9
kidney
8
epithelium
3
heart
2
pancreas
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
16
AMP
Genome assembly (visualization)
175
GRCh38
hg19
Lab
16
AMP-T2D consortium
assembly!
hg19
organ_slims!
brain
BIOSAMPLE
ASSAY
16 results
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DNase-seq
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
tissue
body of pancreas
2
heart
2
left kidney
1
right lobe of liver
1
superior temporal gyrus
1
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