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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
270
DNA accessibility
Date released
84
February, 2021
65
August, 2021
58
February, 2023
55
May, 2020
39
May, 2022
16
May, 2021
13
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
December, 2019
2
March, 2019
1
July, 2019
1
October, 2017
Available data
99
bed narrowPeak
84
txt
64
xls
39
zippedFastqFolder
14
tsv
12
bigWig
12
fastq
3
bam
1
bed broadPeak
Organism
356
Homo sapiens
Biosample type
225
tissue
116
primary cell
16
cell line
Organ
84
bone element
81
pancreas
77
kidney
66
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
3
brain
1
adipose tissue
1
connective tissue
1
eye
1
pituitary gland
1
skin of body
Project
297
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
hg19
234
GRCh38
Lab
220
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
106
inconsistent ontology term
2
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
357 results
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Clear Filters
ATAC-seq
RNA microarray
tissue
bone element
84
kidney
75
coronary artery
35
islet of Langerhans
26
cerebellum (Hemisphere)
1
+ See 4 more…
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
+ See 5 more…
cell line
EndoC_BH1
16
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