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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
267
ATAC-seq
232
total RNA-seq
223
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
223
Transcription
Date released
106
August, 2021
47
September, 2023
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
105
tsv
33
zippedFastqFolder
14
fastq
13
txt
8
csv
Organism
223
Homo sapiens
Biosample type
174
tissue
47
primary cell
2
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
122
AMP
47
KPMP
45
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
hg19
Lab
111
AMP-T2D consortium
47
KPMP
45
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
assembly!
hg19
assay_title!
shRNA RNA-seq
month_released!
September, 2020
BIOSAMPLE
ASSAY
223 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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primary cell
Langerhans cell
45
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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