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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
270
ATAC-seq
256
single cell RNA-seq
248
total RNA-seq
85
RNA microarray
75
WGBS
55
snATAC-seq
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
256
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
98
tsv
52
zippedFastqFolder
36
fastq
8
txt
3
csv
Organism
256
Homo sapiens
Biosample type
169
tissue
87
primary cell
Organ
93
heart
59
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
115
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
hg19
Lab
104
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
audit script error
2
inconsistent ontology term
assembly!
hg19
audit.ERROR.category!
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
256 results
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single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
2
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