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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
132
ATAC-seq
113
total RNA-seq
89
single cell RNA-seq
56
snATAC-seq
48
WGBS
28
pCHi-C
9
DNase-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
89
Transcription
Date released
40
September, 2020
33
May, 2022
12
February, 2021
2
December, 2019
1
November, 2018
1
September, 2018
Available data
52
zippedFastqFolder
36
fastq
2
csv
2
tsv
Organism
89
Homo sapiens
Biosample type
tissue
87
primary cell
2
in vitro differentiated cells
Project
85
HPAP
4
AMP
Genome assembly (visualization)
100
GRCh38
hg19
Lab
85
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
2
audit script error
2
inconsistent ontology term
assembly!
hg19
biosample_type!
tissue
BIOSAMPLE
ASSAY
89 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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