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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
83
DNA accessibility
Date released
111
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
December, 2019
2
February, 2023
1
August, 2022
Available data
84
txt
27
fastq
21
zippedFastqFolder
2
tsv
Organism
168
Homo sapiens
Biosample type
114
tissue
56
primary cell
Organ
84
bone element
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
1
adipose tissue
1
connective tissue
1
epithelium
Project
94
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
hg19
Lab
88
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
30
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
170 results
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RNA microarray
snATAC-seq
tissue
bone element
84
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
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primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
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