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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
262
single cell RNA-seq
212
ATAC-seq
155
total RNA-seq
87
RNA microarray
81
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
snDrop-seq
2
Capture-C
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
81
DNA accessibility
Date released
27
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
Organism
80
Homo sapiens
Biosample type
56
primary cell
25
tissue
Organ
10
lung
9
pancreas
8
blood
8
bodily fluid
6
kidney
Project
48
HPAP
16
T1D
10
LungMap
7
AMP
Genome assembly (visualization)
hg19
Lab
48
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
28
audit script error
assembly!
hg19
month_released!
February, 2023
BIOSAMPLE
ASSAY
81 results
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snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
kidney
6
islet of Langerhans
5
pancreas
4
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