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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
9
total RNA-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
47
DNA binding
11
Transcription
Target of assay
35
histone
35
histone modification
control
20
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
37
May, 2021
12
August, 2017
4
February, 2023
4
January, 2018
2
August, 2021
2
December, 2019
2
March, 2020
1
August, 2018
1
December, 2017
Available data
13
tagAlign
6
fastq
5
bigWig
4
tsv
2
bam
1
bed narrowPeak
1
bedpe bed3+
Organism
65
Homo sapiens
Biosample type
838
tissue
435
primary cell
65
in vitro differentiated cells
62
cell line
7
stem cell
Organ
17
connective tissue
2
embryo
1
adipose tissue
Project
65
AMP
Genome assembly (visualization)
hg19
260
GRCh38
4
hg18
Lab
37
Kyle Gaulton, UCSD
28
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
target.investigated_as!
control
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
32
5
1
adipocyte
12
1
cardiomyocytes (cardiac muscle cell)
1
2
immature adipocyte
2
neural progenitor cell
2
pancreatic endoderm
1
1
Posterior foregut
1
definitive endodermal cell
1
preadipocyte
1
primitive gut cell
1
white fat cell
1
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