Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
32
ChIP-seq
16
pCHi-C
9
DNase-seq
8
snATAC-seq
3
total RNA-seq
2
single cell RNA-seq
1
DNAme array
1
Hi-C
Assay category
84
DNA accessibility
32
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
57
May, 2020
22
May, 2021
15
June, 2019
12
August, 2017
12
February, 2023
8
January, 2021
8
October, 2019
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
35
bam
14
fastq
12
tsv
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
7
bigWig
2
csv
1
hic
1
tagAlign
Organism
139
Homo sapiens
Biosample type
982
tissue
139
primary cell
132
cell line
97
in vitro differentiated cells
7
stem cell
Organ
30
epithelium
12
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
HPAP
114
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
526
GRCh38
Lab
114
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
12
inconsistent ontology term
assembly!
hg19
award.project!
HPAP
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
snATAC-seq
total RNA-seq
single cell RNA-seq
DNAme array
Hi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
peripheral blood mononuclear cell
8
pancreatic alpha cell
6
+ See 34 more…
See all biosamples
Download