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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
single cell RNA-seq
total RNA-seq
66
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
136
Transcription
126
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
47
September, 2023
45
February, 2021
43
September, 2020
18
February, 2023
17
May, 2021
16
January, 2021
7
August, 2020
5
March, 2023
Available data
153
zippedFastqFolder
77
fastq
10
bigWig
6
tsv
1
hic
Organism
328
Homo sapiens
Biosample type
254
primary cell
69
tissue
7
cell line
2
stem cell
Organ
117
pancreas
96
epithelium
47
kidney
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
229
HPAP
51
T1D
47
KPMP
LungMap
4
community
1
ITG
Genome assembly (visualization)
99
GRCh38
hg19
Lab
229
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
assembly!
hg19
award.project!
LungMap
AMP
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
332 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
pancreatic beta cell
16
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
+ See 16 more…
tissue
kidney
47
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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