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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
23
DNA binding
6
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
2
February, 2021
2
July, 2019
1
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
26
bam
7
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
68
Homo sapiens
Biosample type
60
tissue
6
primary cell
2
cell line
Organ
215
pancreas
202
heart
176
kidney
158
epithelium
136
liver
110
brain
89
connective tissue
85
bone element
68
blood vessel
68
vasculature
63
adipose tissue
46
artery
23
limb
21
musculature of body
14
blood
14
bodily fluid
11
nerve
11
spleen
8
embryo
8
eye
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
133
GRCh38
hg19
Lab
68
AMP-T2D consortium
assembly!
hg19
award.project!
LungMap
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
35
2
aorta
2
4
2
1
tibial artery
5
thoracic aorta
4
ascending aorta
3
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primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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