Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
210
ATAC-seq
149
total RNA-seq
122
single cell RNA-seq
87
RNA microarray
36
pCHi-C
28
WGBS
26
DNase-seq
10
MeRIP-seq
7
snATAC-seq
6
Hi-C
5
GRO-seq
5
STARR-seq
3
snDrop-seq
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
122
Transcription
Date released
106
August, 2021
6
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
105
tsv
13
txt
8
csv
2
fastq
Organism
122
Homo sapiens
Biosample type
118
tissue
2
in vitro differentiated cells
2
primary cell
Organ
93
heart
17
kidney
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
122
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
hg19
Lab
111
AMP-T2D consortium
11
Katalin Susztak, Upenn
Audit category:
7
audit script error
2
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
122 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
17
+ See 12 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
primary cell
pancreatic cell
2
See all biosamples
Download