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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
21
ATAC-seq
13
total RNA-seq
10
MeRIP-seq
4
WGBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
55
DNA binding
24
DNA accessibility
13
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
29
August, 2017
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
6
May, 2022
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
February, 2023
1
March, 2020
1
May, 2019
Available data
54
bam
39
fastq
6
bigWig
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
109
Homo sapiens
Biosample type
64
tissue
34
cell line
12
primary cell
1
in vitro differentiated cells
Organ
178
kidney
166
liver
165
heart
122
brain
111
pancreas
94
connective tissue
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
64
epithelium
48
artery
27
eye
26
limb
23
musculature of body
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
149
HPAP
111
AMP
28
T1D
Genome assembly (visualization)
hg19
619
GRCh38
Lab
90
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
WGBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
19
5
11
4
1
1
body of pancreas
9
1
2
2
pancreas
3
1
2
1
endocrine pancreas
2
cell line
EndoC_BH1
2
16
6
2
1
Panc1
7
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
1
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