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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
32
total RNA-seq
26
ATAC-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
1
Hi-C
Assay category
40
DNA binding
33
DNA accessibility
32
Transcription
1
3D chromatin structure
Target of assay
29
histone
29
histone modification
25
narrow histone mark
13
control
4
broad histone mark
2
nucleotide modification
Date released
52
October, 2019
18
February, 2023
15
August, 2017
6
May, 2022
4
January, 2021
4
July, 2018
4
November, 2020
4
September, 2017
2
August, 2021
2
March, 2019
2
March, 2020
1
August, 2022
Available data
12
bam
12
fastq
6
txt
3
tagAlign
1
bed broadPeak
1
bedpe bed3+
1
tsv
Organism
114
Homo sapiens
Biosample type
114
tissue
Organ
65
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
90
AMP
24
T1D
Genome assembly (visualization)
hg19
314
GRCh38
Lab
78
AMP-T2D consortium
28
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
114 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
40
32
26
7
4
4
1
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