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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
21
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
21
DNA binding
9
Transcription
2
DNA methylation
Target of assay
18
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
July, 2019
1
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
24
bam
10
tsv
2
bigWig
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
69
Homo sapiens
Biosample type
63
tissue
6
primary cell
cell line
Organ
254
pancreas
218
kidney
186
epithelium
163
heart
122
brain
95
connective tissue
95
liver
89
bone element
69
blood vessel
69
vasculature
65
adipose tissue
46
artery
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
11
spleen
8
blood
8
bodily fluid
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
123
GRCh38
hg19
Lab
69
AMP-T2D consortium
assembly!
hg19
biosample_type!
cell line
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
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