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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
135
total RNA-seq
87
RNA microarray
29
pCHi-C
27
WGBS
27
snATAC-seq
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
378
DNA binding
311
Transcription
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
26
March, 2020
25
February, 2020
23
May, 2020
22
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
March, 2023
2
May, 2021
1
August, 2022
1
January, 2018
1
January, 2019
Available data
259
bam
207
bed narrowPeak
162
tsv
156
txt
133
tagAlign
126
bigWig
84
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
1024
Homo sapiens
Biosample type
1022
tissue
460
primary cell
132
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
200
heart
122
brain
93
liver
92
pancreas
88
bone element
66
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
932
AMP
47
KPMP
29
T1D
19
LungMap
2
community
Genome assembly (visualization)
1862
GRCh38
hg19
1
hg18
Lab
718
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
1029 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
4
7
1
4
liver
62
1
20
1
3
bone element
84
left cardiac atrium
40
18
+ See 91 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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