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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
138
ATAC-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
338
DNA binding
Transcription
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
184
control
155
histone
155
histone modification
85
broad histone mark
70
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
104
August, 2017
87
February, 2021
76
November, 2017
72
August, 2021
65
October, 2019
48
February, 2023
29
October, 2018
23
May, 2020
22
May, 2019
20
March, 2020
17
July, 2019
16
June, 2019
15
April, 2019
12
December, 2017
11
May, 2023
10
April, 2020
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
November, 2020
4
September, 2017
2
December, 2019
2
March, 2019
1
August, 2022
1
January, 2019
1
May, 2021
Available data
253
bam
167
bed narrowPeak
133
tagAlign
85
bigWig
84
txt
77
fastq
68
bigBed narrowPeak
64
xls
25
tsv
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
1
bedpe bed3+
Organism
670
Homo sapiens
Biosample type
673
tissue
278
primary cell
121
cell line
86
in vitro differentiated cells
5
stem cell
Organ
110
brain
94
kidney
84
bone element
72
pancreas
71
liver
64
heart
63
connective tissue
62
adipose tissue
54
blood vessel
54
vasculature
42
artery
23
limb
18
musculature of body
11
lung
11
nerve
11
spleen
7
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
641
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
901
GRCh38
hg19
Lab
553
AMP-T2D consortium
81
Katalin Susztak, Upenn
22
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
3
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
assay_slims!
Transcription
BIOSAMPLE
ASSAY
673 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
75
6
bone element
84
islet of Langerhans
40
26
7
4
1
4
liver
62
3
1
subcutaneous abdominal adipose tissue
35
3
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