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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
135
total RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
338
DNA binding
309
Transcription
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
184
control
155
histone
155
histone modification
85
broad histone mark
70
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
228
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
75
October, 2019
62
February, 2023
47
September, 2023
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
March, 2020
1
August, 2022
1
January, 2019
1
May, 2021
Available data
259
bam
167
bed narrowPeak
156
txt
138
tsv
133
tagAlign
85
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
954
Homo sapiens
Biosample type
957
tissue
444
primary cell
127
cell line
94
in vitro differentiated cells
3
stem cell
Organ
207
kidney
157
heart
120
brain
92
liver
91
pancreas
88
bone element
64
connective tissue
63
adipose tissue
62
blood vessel
62
vasculature
46
artery
26
limb
22
eye
20
musculature of body
19
lung
12
nerve
10
spleen
4
gonad
4
ovary
4
skeleton
3
epithelium
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
863
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
1819
GRCh38
hg19
Lab
689
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
33
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
85
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
957 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
1
4
liver
62
1
20
3
bone element
84
coronary artery
2
35
1
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