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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
135
total RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNase-seq
Assay category
309
Transcription
286
DNA binding
166
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
184
control
103
histone
103
histone modification
54
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
228
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
62
February, 2023
47
September, 2023
29
October, 2018
27
May, 2022
25
February, 2020
24
November, 2017
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
259
bam
167
bed narrowPeak
158
tsv
156
txt
133
tagAlign
85
bigWig
83
fastq
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
911
Homo sapiens
Biosample type
914
tissue
453
primary cell
128
cell line
97
in vitro differentiated cells
7
stem cell
Organ
206
kidney
158
heart
93
liver
90
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
60
brain
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
819
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1264
GRCh38
hg19
Lab
645
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
914 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
MeRIP-seq
snDrop-seq
RRBS
DNase-seq
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
liver
62
1
20
3
1
bone element
84
coronary artery
2
35
1
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