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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
58
ChIP-seq
35
ATAC-seq
8
WGBS
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
58
DNA binding
35
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
18
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
98
tsv
77
bed narrowPeak
48
bigWig
26
bam
6
bed bedMethyl
6
bigBed bedMethyl
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
2
tagAlign
Organism
200
Homo sapiens
Biosample type
198
tissue
2
cell line
primary cell
Organ
213
kidney
200
heart
165
liver
125
pancreas
112
brain
90
connective tissue
88
bone element
65
adipose tissue
65
blood vessel
65
vasculature
48
artery
34
epithelium
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
200
AMP
Genome assembly (visualization)
229
GRCh38
hg19
Lab
160
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assembly!
hg19
files.file_type!
bed bed3+
biosample_type!
primary cell
BIOSAMPLE
ASSAY
200 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
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cell line
smooth muscle cell of the coronary artery
2
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