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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
30
total RNA-seq
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
51
DNA binding
31
Transcription
1
DNA accessibility
1
DNA sequencing
Target of assay
31
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
Date released
24
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
1
February, 2020
1
February, 2021
1
March, 2020
Available data
95
bam
fastq
44
tagAlign
12
tsv
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
1
csv
1
vcf
Organism
88
Homo sapiens
Biosample type
70
tissue
17
cell line
1
primary cell
Organ
225
kidney
197
heart
139
pancreas
118
brain
89
bone element
88
epithelium
88
liver
69
blood vessel
69
vasculature
64
connective tissue
48
artery
39
adipose tissue
27
eye
25
limb
22
musculature of body
20
lung
12
nerve
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
hg19
188
GRCh38
Lab
52
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
assembly!
hg19
files.file_type!
fastq
assay_title!
WGBS
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
46
20
1
1
right lobe of liver
1
1
cell line
HepG2
4
9
2
1
1
primary cell
hepatocyte
1
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