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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
53
ChIP-seq
23
DNase-seq
8
WGBS
1
Hi-C
Assay category
134
DNA accessibility
53
DNA binding
8
DNA methylation
1
3D chromatin structure
Target of assay
53
histone
53
histone modification
37
broad histone mark
16
narrow histone mark
Date released
65
August, 2021
52
November, 2017
35
February, 2023
23
June, 2019
11
May, 2023
9
July, 2019
1
March, 2023
Available data
179
bed narrowPeak
108
bigWig
99
bam
79
bigBed narrowPeak
64
xls
41
tagAlign
fastq
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
1
hic
Organism
196
Homo sapiens
Biosample type
187
tissue
8
primary cell
1
in vitro differentiated cells
Organ
82
kidney
63
brain
44
heart
37
blood vessel
37
vasculature
35
artery
6
epithelium
2
pancreas
1
connective tissue
1
limb
1
musculature of body
Project
195
AMP
1
ITG
Genome assembly (visualization)
hg19
2136
GRCh38
Lab
120
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
ITG
assembly!
hg19
files.file_type!
fastq
BIOSAMPLE
ASSAY
196 results
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ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
tissue
kidney
75
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
substantia nigra
10
+ See 22 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
chondrocytes
1
kidney capillary endothelial cell
1
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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