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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
9
total RNA-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
61
DNA binding
11
Transcription
Target of assay
34
histone
34
histone modification
20
broad histone mark
15
control
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
14
August, 2017
9
August, 2021
4
February, 2023
2
December, 2019
2
March, 2020
Available data
27
bam
fastq
23
tagAlign
5
bigWig
4
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
74
Homo sapiens
Biosample type
899
tissue
277
primary cell
74
in vitro differentiated cells
72
cell line
6
stem cell
Organ
18
connective tissue
1
epithelium
1
pancreas
Project
74
AMP
Genome assembly (visualization)
hg19
147
GRCh38
Lab
42
Kyle Gaulton, UCSD
32
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
2
audit script error
assembly!
hg19
files.file_type!
fastq
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
total RNA-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
1
adipocyte
14
1
neural progenitor cell
9
cardiomyocytes (cardiac muscle cell)
1
2
immature adipocyte
2
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