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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
51
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
157
DNA binding
60
DNA accessibility
51
Transcription
41
DNA methylation
Target of assay
93
histone
93
histone modification
64
control
61
broad histone mark
32
narrow histone mark
Date released
134
May, 2022
60
November, 2017
46
August, 2017
23
May, 2020
18
September, 2020
9
August, 2021
9
October, 2019
6
October, 2017
3
February, 2021
1
May, 2021
Available data
394
bam
fastq
219
bed narrowPeak
198
tsv
160
tagAlign
157
txt
153
bigWig
153
zippedFastqFolder
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
309
Homo sapiens
Biosample type
153
primary cell
130
tissue
23
in vitro differentiated cells
3
cell line
Organ
84
pancreas
82
epithelium
73
brain
44
liver
21
connective tissue
7
adipose tissue
2
artery
2
blood vessel
2
heart
2
musculature of body
2
vasculature
Project
157
AMP
152
HPAP
Genome assembly (visualization)
214
GRCh38
hg19
Lab
157
AMP-T2D consortium
152
Klaus Kaestner, Upenn
assembly!
hg19
files.file_type!
fastq
BIOSAMPLE
ASSAY
309 results
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ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
hepatocyte
1
tissue
liver
43
caudate nucleus
14
layer of hippocampus
14
substantia nigra
14
cingulate gyrus
12
+ See 14 more…
in vitro differentiated cells
adipocyte
14
neural progenitor cell
8
pancreatic PP cell
1
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
See all biosamples
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