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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
12
total RNA-seq
10
DNase-seq
2
ATAC-seq
2
pCHi-C
Assay category
92
DNA binding
12
DNA accessibility
12
Transcription
Target of assay
69
histone
69
histone modification
44
broad histone mark
25
narrow histone mark
23
control
Date released
76
November, 2017
12
February, 2020
10
June, 2019
8
October, 2019
6
October, 2017
3
May, 2019
2
March, 2020
1
July, 2019
Available data
88
bam
75
tagAlign
63
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
fastq
Organism
118
Homo sapiens
Biosample type
118
tissue
Organ
225
kidney
205
heart
180
pancreas
129
epithelium
118
brain
91
liver
89
bone element
71
blood vessel
71
vasculature
67
connective tissue
48
artery
42
adipose tissue
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
202
GRCh38
hg19
Lab
118
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
files.file_type!
fastq
lab.title!
ITG
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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