Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
71
total RNA-seq
55
ChIP-seq
45
WGBS
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
94
DNA accessibility
71
Transcription
55
DNA binding
45
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
86
May, 2022
56
February, 2023
29
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
4
July, 2018
4
November, 2018
4
September, 2017
3
August, 2021
2
June, 2019
2
March, 2019
2
March, 2020
2
November, 2019
1
August, 2022
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
54
bam
16
bigWig
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
277
Homo sapiens
Biosample type
155
primary cell
89
tissue
34
cell line
1
in vitro differentiated cells
Organ
279
pancreas
213
kidney
204
epithelium
154
liver
108
brain
91
connective tissue
89
bone element
67
heart
62
adipose tissue
61
blood vessel
61
vasculature
44
artery
23
limb
22
eye
20
musculature of body
19
lung
14
blood
14
bodily fluid
11
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
143
HPAP
108
AMP
28
T1D
Genome assembly (visualization)
hg19
229
GRCh38
Lab
143
Klaus Kaestner, Upenn
90
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assembly!
hg19
files.file_type!
tsv
BIOSAMPLE
ASSAY
279 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
primary cell
pancreatic alpha cell
29
42
6
25
pancreatic beta cell
16
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
16
17
19
7
4
1
body of pancreas
9
2
2
pancreas
1
3
2
4
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
Download