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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
64
ATAC-seq
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
Assay category
72
Transcription
64
DNA accessibility
Date released
121
August, 2021
89
February, 2021
6
May, 2022
4
February, 2023
1
October, 2022
Available data
394
bam
350
fastq
198
tsv
179
bed narrowPeak
160
tagAlign
157
txt
153
zippedFastqFolder
113
bigWig
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
220
Homo sapiens
Biosample type
220
tissue
1
cell line
Organ
126
kidney
88
bone element
6
pancreas
4
skeleton
Project
221
AMP
Genome assembly (visualization)
64
GRCh38
hg19
Lab
121
Katalin Susztak, Upenn
94
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
221 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
tissue
kidney
64
49
13
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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cell line
MIN6
1
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